Scaffold Ga0209232_1011319

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1011319
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3668
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011191	Metagenome	294	Y
F055203	Metagenome	139	N
F071653	Metagenome	122	Y
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10113193	F011191	GGAG	MKSYFIDAKNEFIVDVDVKNYEHKKELIKCRMLELYPYQINGNDIWVDEEGNLKDHNYFFQIDNDVVVSGNAVIMSCDDEGESIPPKKLTLEELKSRVNFIGKLDIDPTKLKFEVVEG
Ga0209232_10113194	F071653	GAGG	MSKNQTDVDVENFVKDIPSDTILIEVRGGMVSDVHNDPNGYMLFDWDSIGEQDTMEFHKKVLEKLLER
Ga0209232_10113196	F106087	GGAGG	MTIKIPTPTFLEIQSELADWLMSTELGHDVYLTMLIRTEDEESYTDEGQEIFNEKYDDVEAFLNNYFEKEDK
Ga0209232_10113199	F055203	AGGAG	MNACESCGDLHDPSDMVNTIEDFYFCYTCEEKNRELYDFMWFSKFSKKVIKEEDNG