Scaffold Ga0209232_1010861

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1010861
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3756
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016882	Metagenome / Metatranscriptome	244	Y
F054361	Metagenome	140	Y
F077944	Metagenome	117	Y
F092866	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10108612	F016882	N/A	MAYYVAKVKIATDTPKGVKWQSETYLVDALTVTHAEALVNEDFKDSGVEFEVKSVSKSQICKVIESSTKNS
Ga0209232_10108614	F077944	N/A	MREEIKKERIKKRVLKDHPKAYVDHDCNGYKIMVGDKYIAEDYFLPDTHDLDKAWEYAALACKTTQNFNRSHPDRMDLSEKEGKYHRINKRKRRGRRAK
Ga0209232_10108616	F054361	N/A	MGYVNNTAAYDQKKVRKYGKLYGTIDFEVNDSISEHYFENNEKPVVGKLHIGSKTFDVTYQELDMIARTMTTAKDVVNRKHKMGMMR
Ga0209232_10108617	F092866	GGA	MGFHKRYINDEQVIDIYRNNGCQAVIDWYQKGTDAVILSGELAETVHTLMNILEHDHKRGWNRISETIANASIKKGFKN