Scaffold Ga0209232_1010257

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1010257
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3888
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017223	Metagenome	242	Y
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10102572	F017223	N/A	MISLPEDFVILKFFELGYYPKYNKFNNVYQCSCPICKEGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLKWIKEVSNCSDTDVINELKEYVPDAEDVIVNREEARPTIQVETLPKDSINLSDEFQLDYYNSNSVITAVRYLVKERRLDTAVNRPDSLYVSLTDRVHKNRLVIPFINENKEIEFYQTRTVLNKDNKTKPKYLGKVQAEKTLFNIDRVSSDHDKVYIFEGPLNAFFTKNSIAVAGITERGRSFTQRQEQQLNSLKWHDKVWILDSQWIDQASLVKSEALLKQNEKVFVWPENFGKRFKDFNDIAIAAEIDEIRWEFIERNTFEGLEGIVKLSEIKKYRNLIKHT
Ga0209232_10102574	F026716	N/A	MNYSKKQIYAVETGDYVGQMFVVVEVSNDDIGCLSLPEMENVKVPRESFDSGRNNDIIKLIEELPKNVYSVVEAQYNKNENTDSRRQQLNTPNVLYSKESVEKD
Ga0209232_10102575	F066235	N/A	MDSEDDLNSRDDDELRELVERALKDNIKERKSFKRRQDLANRLSTILCEYLDSYILLGYDFNGKHLDIKAASTPQQKEALNSFLMKYFATEIQSIKGINPDSDELL