Scaffold Ga0209232_1009837

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1009837
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3982
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F041168	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100983712	F041168	GAG	MKQAKVRRHTVGFFKRDAEVPFINLSMFETIADATGIPHYWRDADGNVSQFWHAGVIPKGTGVVCAHRERGMKHTFWTVTDPESELVGKMFIVGHTFKDRKEYEFEKFEYSNISPTLKYSILSEKP
Ga0209232_10098375	F018267	GGCGG	MRIGDLISFKPKSFSDDDWSNPCIVLDAYVNDDRRGGGYRDTIWVVWCDGGKYMVNPRLDDILYLTSSLHLRS