Scaffold Ga0209232_1009265

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1009265
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4121
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F059351	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10092652	F002594	N/A	MAKVPISRLNSAPENYVQNDFNQLIEDLQDMVKILNSTYPKDQTDEQDRKEFFLSG
Ga0209232_10092653	F024421	N/A	MEKLNQKRSLEAKWASEFIANGAVTVEMVNISKEVKKLEQEIKEDSEKQP
Ga0209232_10092654	F011527	N/A	MLVYFQFRRCGYYAHGLIESENLDVAAKALWSEHVKTFKWEPQLNFIPDEMNTLTVEEYKYGASSDGKTEPEAKPGGEMGK
Ga0209232_10092658	F059351	N/A	MTQKIKVTAELEIEDDVAIDGLSMDTSLGLLGTIKSYNIDYEKKKELKPKLTYDQVKEKYFHKDLNIDTMRTQIISAFITQESEKFHDFAVDAIDETVLKQEFGEIPEQDQELVTEILNDEYTHEVLAKKALKDKHGIE