Scaffold Ga0209232_1006977

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1006977
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4874
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F007093	Metagenome	358	Y
F007401	Metagenome	352	Y
F023485	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100697711	F001689	AGGA	MKLKRDYEDTFKEGFRLGVRLTRAKACLENARNAKILNDEPVFKLQMEFASDWTDLARNSGRKFTPMTAHEPEQSAFDFGDIEMQEHLSRLPHKLKETG
Ga0209232_100697712	F007093	N/A	MISMPGLPTVKHTAELWFDGPKCEARRVDIENKFYDAAAEQGINPVWLHTWCLESSMFVINKT
Ga0209232_10069774	F023485	AGGA	MYTKLPESPVRKVYKCRHCGDVSIKFYNPKHDRVYTAEEWEVIMTDGREALDKALRLVREDPKMFS
Ga0209232_10069775	F007401	N/A	MSDQEILKQRDLLDAILASRTNDQYERIESMKVMDSIYFKENLPKNVVLFPLQRIKRYVHQTTRKPSKKSL