Scaffold Ga0209232

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1006848 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025132 Open in IMG/M

Scaffold ID

Ga0209232_1006848 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4925
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4925

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F007531	Metagenome / Metatranscriptome	349	Y
F023755	Metagenome / Metatranscriptome	209	N
F024414	Metagenome / Metatranscriptome	206	Y
F071648	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10068481	F024414	AGGAG	MGTRLADIIMDRHEDFLYEDSRAMKLTPYVMSERCLQVEMSNIYKDYKSGDYDTLTYILEGGFKGFHNMDSSELIEEY
Ga0209232_100684810	F003357	AGGAGG	MTRNSWILRQIYTDAKNNLGWLFKVVLLAGGFIAGIKLLVFFSVPKEIVFPILWIGFILVAIYHWYSMKYDWKKDESKYDRASKRYMKKLKGAK
Ga0209232_100684811	F007531	GGAG	MLDKIEKQILEFAKETGLTERIEIVHGTLYVKLWENVECDHFHKMIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEIMDPTDIDDKGIWSEFAEEELMNNVPEDVDTMLDLMNDAEEGR
Ga0209232_100684812	F000302	AGGAG	MIKTMTQDTKDRIADLERQKIDLENQLELLGYSGNLVRMHQIEEEIYEIEDSIRKLLP
Ga0209232_100684815	F023755	GGAG	MTDKINMVINLSILALLIYLAVQVHELQNPPKYQPAVSMGMVDEQEFKYNIKTFLNNVIEEAITEQENK
Ga0209232_10068485	F071648	GGAGG	MKRTFACTVCGVKFTHKKPETLVGKLGIIPVNLCKKHFKAVMKNDELWLNDHRKVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209232_1006848

Overview

Ecosystem & Geography

Associated Families

Sequences