Scaffold Ga0209232_1005638

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1005638
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5539
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F036974	Metagenome	169	N
F037984	Metagenome	167	Y
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10056382	F009889	AGAAG	MRICSFICVLTLFSCSANYHYRKALKKGLEPLISSDTIRIATIDSIPVVRHDTIVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRYETRVEVERAKASKQPNYLLWVFLIVLVLAALQVFKKFI
Ga0209232_10056384	F037984	N/A	MNRTEKLELLIEIQEAIEHFDKRIEDAEWSNTFGYGFEIPQIRQKNEHNIIIYGMCIGRLNERFTKQLNTLK
Ga0209232_10056385	F042076	GGA	MKGEIEIFKNEDDIVEFGIHDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEQTTTFVRMDTLECSGTMYYSKEDICSELERMLNEDNC
Ga0209232_10056387	F036974	N/A	MNDPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYAIKYLKAYNKHDAISAFNLWKGLIIKVELCD