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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025132 Open in IMG/M |
| Scaffold ID | Ga0209232_1005446 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5642 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (86.96%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005547 | Metagenome | 397 | Y |
| F018286 | Metagenome | 236 | Y |
| F030886 | Metagenome | 184 | Y |
| F059942 | Metagenome | 133 | Y |
| F070089 | Metagenome | 123 | Y |
| F074757 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209232_100544612 | F074757 | GGAGG | MIWKHKKPLVGLVVRVERNPWEEKLELSTNEKTFYYINWVQNGPGSRYGRSHHHTDGYFLRNDLKFVKQGDFK |
| Ga0209232_100544615 | F005547 | AGGAG | MKVWVMQGSYEGEMFSSVHLTQKGCALACIADVLEFHGVDDKDTALSVMNDCYAYTETDGEQTEPFEWDQEKMKNMNSKELWKIFSEWVEISWDRMADRSYNIEAQPMEIQA |
| Ga0209232_100544617 | F070089 | GGA | VKVGDLVKFESVLNDSMDYHTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVVSESR |
| Ga0209232_100544618 | F059942 | GAG | MKAGDLISFKPINFGLEDWSNPSIVVNEYESPNEGLWTIWCDGVYCVIDDDNYEIVHLTS |
| Ga0209232_100544620 | F018286 | GGAGG | MNILTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAVMPVSAFPCEISEGQVFFVVKVHEDQDAQIICQQESEDVGQPDEPDTCMH |
| Ga0209232_100544622 | F030886 | AGGA | MSYHDGIPPQYNTTGIGVVNPLRQIEIKLKKIQDVLDNISDSSILTANDLKAKLLKVIDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |