Scaffold Ga0209232_1004840

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1004840
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6073
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F020921	Metagenome / Metatranscriptome	221	Y
F043965	Metagenome / Metatranscriptome	155	Y
F050424	Metagenome	145	N
F072428	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100484014	F050424	GAGG	MAIEFENIYKDRVIDTIQKLLKQNLVSIPIVFDEHRGQESFLIVPQSDTFIDYASNVHIREFTTTINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGIVSSVEYTRDEEDETISNVIITFQCNTNEVIS
Ga0209232_100484016	F043965	AGGAG	MAVSGKVYSKSDFSVGIKNKNATAFETAAANDTAYELLPVINVSAPVLNLVESGEIRSNNAGMIELDTDQFRTTKGGFITMDFEVPAERDMIVRMLANVLQDHGESGSDPYTHTIQATSGAALSRPDFTGSSSSGIPSLFDIGLYYPE
Ga0209232_10048402	F003637	GAGG	MAKVIAEKVQEQVQVDSPKMVEIKHTRTMQDASGNDVEVVDYTETISVDEAISRTESRKSELEAQLTECESELADYIAIRDAE
Ga0209232_10048403	F020921	GAG	MATPTVPTTNVGMYDDLRPATACTDTTNLSLASLCDGGTHGSITNSFGAAGGAAKDFDVIGGTNNPITTTPNSVNLYNDIIGNAPFNLANTIGGRYD
Ga0209232_10048408	F072428	AGGGGG	MDLAETIKRLKELSVMLQADTISDREKEFYLPEMFRLIDNLDIPELIGEFKNEYIS