Scaffold Ga0209232_1004708

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1004708
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6176
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y
F089416	Metagenome	109	Y
F090264	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100470810	F026716	AGG	MSYCKRELYAVHTGDYAGQLFAIIDDTKEFVHCLSLPVMENIKVPKESFESGRNSNIIKFVEKLPRKIYSVVEAQYKANENSDNRRQQFNTPNISYSEDAVEKDQDSFG
Ga0209232_100470812	F089416	N/A	MISLPEDFVILKFFELGFYPKYNKFNNVYQCSCPICREGNSLGKKRRCYYIPKNDNIFCHNCGWSGKPLRWVKEVSGDTDEKIIKELKDYVPSIED
Ga0209232_10047084	F090264	N/A	MINDREKSIYNSFLYASRKAKNKPVRLRQNFDNIESKDEVALKKLNLLLSKYTHINYSDFFIAPYKVYGADNYFDLTFFNTRRAIKCYSMYCKDKQVQNPDSEDSIDTLRECLKFIFNFCIEEKITLAQYKNYVGVEAYNSIPLVFTHLKNHKINFYLLHALNMDPVIKRQDETLNWIISDFYDLYSKTRSKFVSSKLLKNKAKKGIKIIEQKLLKFGS
Ga0209232_10047089	F066235	N/A	MDESEDQFDNDEELREMIEKALRDNIKEKKTFKNRKELAHRISGIISEYLDSYILLGYDFHGRHLDIKAAKTPQQAEALNSFLLKYFAQEAQSIKGLNPPDELL