Scaffold Ga0209232_1004600

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1004600
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6258
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100460011	F004603	AGGA	MIFSININGSIVDWCYTINNQEKQYHQTWIPKIRDIQIITKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARREKNV
Ga0209232_100460013	F048285	N/A	MKIDQEQLEKATAFILETNKYIYEQAEELALQHLQAEDNKNFKARIKRYEPESKETFMHFADEVTSWAECEKNYPLMDFIHKFFRIKKGYKNELY
Ga0209232_100460015	F019114	GGAG	MKQLNSRMVEARDEFYRNRRNRGFMAFWWSDPLHYVLGLEVAIADVSGKSINFEAIVKLLPSSMGSRSTVATVLDDFVARKYMCKKVGKDKRKRVYTICPEAMKLMNEWFTKRDFSLKAV
Ga0209232_10046008	F002399	N/A	MGEPMSIPKTRTHKSVIGQLRKKYGLKDNTPIHKVEQIMTPKDWKTFSDALTFPNGKPTQTGK