NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1003430

Scaffold Ga0209232_1003430


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1003430 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7472
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (39.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012834Metagenome277Y
F020461Metagenome224Y
F042856Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10034301F042856N/AQIQQQNLRELARLTFLNLMSVNGVMAKTIIRNYKQKQERKSYENIRYNNSV
Ga0209232_10034303F020461N/AMYIDKYKVQIKGDKYHHKTDKRMKDQVLATYECDDGMNIKKLMNVIQELAECHEAHHKINFDITLNQYSEN
Ga0209232_10034308F012834N/AMKERFTDTAWTEGDFNKATTSPSQTALQNSIWFIKYHLSPHLNFKPERPSISFEAGKFIHEWFQQILVGQAKIEDVELHFKTFINNFDFGERNNIKAQFILKNIKGYVERHLMCIDELSDNFSGWKVEEPLSDWYDNKYMGQTLNIATEGYIDCVNHNEKKITEHKNRFGSVRNSPLKINRKDSNVNRIGDWVYSKSQPIKQPQFTHCIQISVYSKHYNYEYKPYLVYVSDGGSITFTPDNCWELTPDGLQYFFRKFIQINIKRQELLRAANGSIKKLACLIDVDWSEIRNFKSNFMLENYDEEDMQRLENFYEKL

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