Scaffold Ga0209232_1003430

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1003430
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7472
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012834	Metagenome	277	Y
F020461	Metagenome	224	Y
F042856	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10034301	F042856	N/A	QIQQQNLRELARLTFLNLMSVNGVMAKTIIRNYKQKQERKSYENIRYNNSV
Ga0209232_10034303	F020461	N/A	MYIDKYKVQIKGDKYHHKTDKRMKDQVLATYECDDGMNIKKLMNVIQELAECHEAHHKINFDITLNQYSEN
Ga0209232_10034308	F012834	N/A	MKERFTDTAWTEGDFNKATTSPSQTALQNSIWFIKYHLSPHLNFKPERPSISFEAGKFIHEWFQQILVGQAKIEDVELHFKTFINNFDFGERNNIKAQFILKNIKGYVERHLMCIDELSDNFSGWKVEEPLSDWYDNKYMGQTLNIATEGYIDCVNHNEKKITEHKNRFGSVRNSPLKINRKDSNVNRIGDWVYSKSQPIKQPQFTHCIQISVYSKHYNYEYKPYLVYVSDGGSITFTPDNCWELTPDGLQYFFRKFIQINIKRQELLRAANGSIKKLACLIDVDWSEIRNFKSNFMLENYDEEDMQRLENFYEKL