Scaffold Ga0209232_1003020

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1003020
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8089
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003320	Metagenome / Metatranscriptome	494	Y
F011340	Metagenome	292	Y
F044552	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10030202	F044552	AGGAG	MSWDGLKEKRPIPAKSIDGYVRTEDEERNLNKLFAGVFKNDDGKKILEYIKSITTEAVAGPNIDSNGLFHLEGMRFLTAVIQTRIKKGEQDGRX
Ga0209232_10030206	F003320	AGGAGG	MAYSTDNPVKKISQMGPSNSLWYYTDGDAIGTIDDADYFLADYENLTAGDIIFVNSGGSNGVVDILMVSASSSSTVTTVLLA
Ga0209232_10030209	F011340	GGAGG	MSADPVTLAIASTVVQAVGTYSQIQSQKATNKAIIREYETEKKYNQLKGLQDSNDVLEEARRKRKQNLAIVAGSGYNDDSRSFLSTQSEIKRIAAKDVTNIKINTLRGESKIESQIYTTKVMGKAQEFGAYASIAASALKTGSYAKSYQGGQPRGQYFTDDPGDKIG