Scaffold Ga0209232_1002468

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1002468
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9184
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F016324	Metagenome	248	Y
F017285	Metagenome	241	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10024681	F025414	GGAGG	VQVGSLVRETMDGNVGVILAWEDDGWLVNFPKHGMVFHMLPRLLEVIDASR
Ga0209232_100246812	F008590	GGAGG	MQVGDLVTYCFQRPRWRKGESVSVGIVVETGKYTGNTDVKVLWTDKAEPETEASHHLSIVDKSLTT
Ga0209232_100246815	F057769	AGGAG	MTIEIGSIVTNVGFIQGRNNSNHGLVVSLLADGKIARVFWASTQKSGFCSVVDLQVVS
Ga0209232_100246816	F026439	AGGAG	MASQLDTVTLWETAREQFIDLILPMIQEDEQRLGHVDTVARSEAWSNFVDALHYSDSISDWQVANWEHPPCCD
Ga0209232_10024683	F017285	AGGAG	MSWSGTVTCSHCYRQGHNKRKCPVLTDQICDKYKGNVLAAAKEREAGNENDAKWYESRAEEYRQQYIKRTKIDLATGEKVTNKAAKAERMKKVTCGYCKERGHTRRVCQHAKRDKQIFVEETRRMRIAALESAREVGIGVGSMVPIRSTGYDSDGQWRSDILTLRYVQSVLWDDCHANRPTLIVKHIDARKLGAPSQSAYTSRDNITKLVQANDTALRYAAAEGQDLPVSSLIPTLEPPKGWLQPTEQSLYKAIAQAFPTAGNEYQKSRNYDFAYPSGITKEIIKDLGLEEHYDMRNA
Ga0209232_10024685	F016324	GGCGG	MHSSVRRPPLRPPKVGDVVRLSGPGGMGRTYTKVHGVGIVTNIHKPEQARKLYEVKWLKSEERMRFHEEDLIIVSDVDR
Ga0209232_10024688	F014672	N/A	VGVFAFEQEQAVLVGKYKPGDLVRIKDGTHQDGMPDHRVGMIIEDGHASKSYSGPYTIVFLGSDIRLKFHEMFLEPFTSS
Ga0209232_10024689	F009562	AGGAG	MLAIPLIRTDDDTNVTPIERTALACEQVITAMMMQATLDDPAVSDAEREVYTTLSVATIIPAEA