Scaffold Ga0209232_1002232

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1002232
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9680
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007266	Metagenome / Metatranscriptome	354	Y
F013025	Metagenome / Metatranscriptome	275	Y
F024116	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100223212	F013025	GAG	MKLNTNISLENIVTIVALICSVTLAFGFMQYDIDIIKKDLESKVDKKEVVADRKLITYKLDIITAEIEEMKISLKEIKGEIHGLRK
Ga0209232_100223213	F007266	AGCAG	MENTKPISDNSSLSISLPMIIQAVTFVVMLVWGYSQLNARISFLEYQVAMNESHIEDIEEDAEANQDAEIPADIKQNQRIEYLEKEVERLRNK
Ga0209232_100223216	F024116	GGTGG	MNEDWKDYVSIIAFLFIVLGGLVLIGSCDSGWSIAGYEV