Scaffold Ga0209232_1001198

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1001198
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14339
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (81.63%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F067640	Metagenome	125	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100119818	F059942	GAGG	VKAGDLISFKPIDFGLEDWSNPSIVMSEYKSPNEGLWSVWCDGIFCVIDDTNYEILHLTSSLLDETTKG
Ga0209232_100119823	F070089	GGAG	MKVGDLVKFESMVEKEVFETDPSRNHGLVVQISKTGHDTISAQVLFNDGELWWVDSGRLEVTSEAG
Ga0209232_100119824	F079212	AGGAGG	MNQDERELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDLEIINESGRSGKV
Ga0209232_100119825	F018286	AGGTGG	MKTLTTFILLGMVDSFDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGRVFYIVKLHDNQDAVIICQEDVKDEPRRKRAD
Ga0209232_100119826	F010950	N/A	MNIWVVRQTCLFDHESYVTTHLTEKGALITAIKTVREDMVDGFDEDEIDDYRPDMPHHPEEDLMQYSREQLRGMVQDWWEYSFDINEQAQYQIYETQVEA
Ga0209232_100119827	F057352	AGGAG	MKLWVLHGTYENELFSSIHLTEKGCALAAIADVLDFLGVGDEESALQVMNDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFTDWTEISWDRMSDRSYYIDATPQMVQA
Ga0209232_100119829	F067640	AGGAGG	MIEVGSLLRMWGNHSTWIALDEIADTVLVVSQKRNHKMWASKSAFEVIG
Ga0209232_10011983	F105146	GGA	MIEVGNIVRSKYTVDRHRARIGIVIQMREGAYEDQPLAQVFWPHRRDTGWVEAKDMEVVS
Ga0209232_100119833	F030886	AGGAG	MGYHDRKRPDYERTGMGVVNPLIRIEQKLKKVQEVLDNISEASILTANDLKCKIQKVLDE
Ga0209232_10011989	F004771	GGA	MKRRVRIGDLVTMYTHDTGLIGVVLERHPNGVEVDGESTTQIGIKWFNGANSFEWEPEGWLEVVSEGG