Scaffold Ga0209232_1001072

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1001072
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15447
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000502	Metagenome / Metatranscriptome	1073	Y
F029471	Metagenome / Metatranscriptome	188	N
F062276	Metagenome	131	N
F073589	Metagenome / Metatranscriptome	120	N
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100107212	F029471	AGGAG	MMGSELNQQDYSDSRLNDMQDVLDCVDMKAGVTGFFNTVISPFADHPDWSMLAEWNANSIIGVFQRHHEQCIKSLDKTKDLMQTALREDVGNEITKLNVDKLIFRRDAQEVNIKRAESILNEFLLCYETTFGKKFVPQSKAPVKDVTKQMKEYNMTRLKEALGK
Ga0209232_100107214	F000502	N/A	MEVVGKLMMILTGFILTMLGSITFIHSDHQTLGIIICFAGIVSMFAGLPNNQRDR
Ga0209232_100107215	F076607	AGG	MTKYKQHIVDELAKLQFDYAECKIEMDEFIAGITRLGIDSPGDIEEHRSNAEEARYEYKVSQHQNKF
Ga0209232_100107233	F062276	N/A	MNTIICLRDIFKKRKVSNKEVVTLFDNIADTVTIDLLKGNTIDAAQVALVSNVMQIASNYNNKKFAIDLLQGALAELESDHFIETGNKLS
Ga0209232_10010729	F073589	AGGAG	MNYKVNIWKDDSLKREIVYSAENDIQAIQMASAATPDGCRSTYEQMEEQCPTEKEPTVQKEEDLLQKAS