Scaffold Ga0209232

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1000898 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025132 Open in IMG/M

Scaffold ID

Ga0209232_1000898 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17056
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (73.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17056

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (73.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005018	Metagenome / Metatranscriptome	415	Y
F016167	Metagenome / Metatranscriptome	249	Y
F023955	Metagenome	208	Y
F036426	Metagenome / Metatranscriptome	170	Y
F064099	Metagenome / Metatranscriptome	129	N
F081757	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100089814	F081757	GGAGG	MIRIIKYIVGTYVIVCTVVMTLLLSTFVVKADHGAEHGPGWHSNNCDQQPWQDDQGVVCNMMGLESKILEHHDYKIWEFDDSYIIMYKDQEILQWDCILDSTTTDANRFFCAVMMDYDYDRLESFIYE
Ga0209232_100089815	F064099	N/A	MNNIYRLIIIILLVYIIWVDHMYVQVGWCESEIDVLRNTIAEIHTILKQ
Ga0209232_100089816	F036426	AGGA	MKSLIVILTMLFSTLAFAESEYAPSNNDRIILYKVTSDNENAPTYSGYYRDSNGKVHQVALWTGRSDRYLEGPVTAMTEVASND
Ga0209232_100089819	F023955	AGGA	MKVKHNIKIVRQDGDIEYHDVEGQWNEEGSGGPSFKPLYELLNCKRLEFTCGMNLQDTKELTIFLDEEGLYKENNQINGYATAMQKRWCDATGRMQISPIVGDVAIDLGLTAESLAEVSIELELQDYERQSNTTQA
Ga0209232_100089828	F016167	AGGA	MARMSERQREYFLSRVNDEIYNHKRSLELKESSAKEKMVKKLYPKYVEQVGLKKELAELQTLETKYNKLLNHMGNTIKRMLEVEDMYSSYNRNYDEIVSNLTKLAKKTLDREFVKSPEGKAMLQLDQAHQRAKDIIWSAGSDSNIMQVVGNVLSKDAGISLDYNPLQIESK
Ga0209232_100089848	F005018	AGGAG	MAVTKEWVSAIPKSNADGNVTEWSVEYKYTDGDFSHTFSKSEKIDTPSKAAGSYTKAELLTLMDEAHWDDMFAKKHNVHKNPPVADTIDNSFDVSTLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209232_1000898

Overview

Ecosystem & Geography

Associated Families

Sequences