Scaffold Ga0209232_1000894

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000894
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17118
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009959	Metagenome / Metatranscriptome	310	Y
F016813	Metagenome / Metatranscriptome	244	Y
F032680	Metagenome / Metatranscriptome	179	Y
F073567	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100089419	F073567	N/A	MNNLTNTQLKEIKSLYEMISLGWHYTNHPMHDHFMKQHNDLPDYE
Ga0209232_100089420	F016813	N/A	MLDLTKLPVLNNNHEYLMDNEDYSELFERLNYKTEDYLIVYSYSHDFLEVVLELIKYNIEFTHQSCHLSDESYLIIDITQE
Ga0209232_100089428	F009959	N/A	MTEQEVIDKVCDRLVTTLYNELDYYMFEELGYTETDNNYVKAADRLARKIVKELIS
Ga0209232_100089429	F032680	N/A	MTKYVSRIMDEVYDNFRNHFTEPEEQKDFLRELIEELSQEYNYIEYDND