Scaffold Ga0209232_1000586

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000586
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21909
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005353	Metagenome	403	Y
F014446	Metagenome	263	Y
F081893	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100058626	F005353	GGAGG	MFTIDTALKQLDVTEKQVRKIRAELPKLNREKVDKELKLLLLDLQLMRNDLRSINNKEKVNAE
Ga0209232_100058631	F014446	AGG	MLTMRDWIWVGCIIGGIAFTNGMMSSRVTALESKIKDIDMLRIDARLSVIEAQVISINKKIDEAIK
Ga0209232_10005865	F081893	AGAAGG	MLKNHVGIVNEGSLVKFMLHTSEAVSWWNDNVDDFNKEIRAKALRERYVEHRFANDIYQGMLEHFGK