Scaffold Ga0209232_1000214

Overview

Basic Information

• Taxon OID: 3300025132
• Scaffold ID: Ga0209232_1000214
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36997
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (69.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016083	Metagenome / Metatranscriptome	250	Y
F025855	Metagenome	200	Y
F086169	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_100021429	F016083	N/A	MSLYKYTQKEAANLLIGQNGFDVIAEHDTTVVNPDTGSWIAIQALGKDSSGTTEFLKIKVTSNIGDDISSFVNLIPGEILYGNFSGIVNHTDSTAVCIAYRG
Ga0209232_100021441	F025855	AGGA	MKKCIHCNKENKGGWFYCKSCGKQASESKFTTNMWMTSDLGKRTDVEFSTQSMSDNVKSMRKNLGYAS
Ga0209232_10002147	F086169	AGGAG	MSDQQPDWDKITEGKIRHGIAVEAFGKGMELNEDNMRLMEQWVQFIIHGYDGIKDILEQKKALSSEEVKKEIIDKFDGEVVKETDEDYVKNEINKAVKTLGQKDKNKVLYQLKQGNITVDNLQVCLEKIEVMKHF