Scaffold Ga0209232

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1000007 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025132 Open in IMG/M

Scaffold ID

Ga0209232_1000007 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	183444
Total Scaffold Genes	252 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (23.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

183444

Total Scaffold Genes

252 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (23.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004358	Metagenome / Metatranscriptome	442	Y
F047358	Metagenome / Metatranscriptome	150	N
F052252	Metagenome / Metatranscriptome	143	Y
F064195	Metagenome / Metatranscriptome	129	N
F084835	Metagenome / Metatranscriptome	112	Y
F090990	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_1000007115	F052252	N/A	MQDQFINPQQIRSPFTGETVRPVYNTYDANGKTYEQAVMSDPVTGHIIKKGLVSIKDAKTGEVIQDYKSALSQSNTTQSRR
Ga0209232_1000007179	F090990	N/A	MSDQSKIFNLYESNLNQSAIASMQQRNNDKNYGKYTPNQGKPSYAKYSVPTTNASKVKGAPFISNGISGDEEIELKGYGVIDSEQASKFLERVKNDIHNLIEKNATGFVLKSKLDLYTTVIEQMKKKGLIS
Ga0209232_1000007180	F064195	N/A	MEKPITFFRSFLENINFATFFLAAVGALAALWLNSNYVSQEVYEKDQQIIQLKIESLETETQALRFMAQTNQTEIRELLPLVEKIETLISNFITPSGDVIITESMKEMEVDIAEIKKDIEYMKARLWPTD
Ga0209232_1000007244	F047358	AGAAG	MKKKYIIIGAAVAVIAYLALCGKAEAQEVEQEKTWKVDVTTGYYEKRISGGLYGAQDVGYFKASTKAGDFAGLSFVGGLEYVHSDDYQLHYSLGTYLNTFIGGVDTRVVMHTIEGADTTFELNGAYDLNWFESLDTSITVAVEDGSEVGSEYDSKIVTPAFVVSKTFVVGDAVDVTVGAEYGQSFGLDDELEYTHGYVRFDTLANDLPVFVQVNALKNNLGIVNDLSSEGTDGDFDVSVTAGLAFSF
Ga0209232_100000727	F004358	N/A	MFGLVTMLLTTLGATGMGSMLKIVGGLFAGISDAKEAKHKRELIRDMQLQKADLEFQKAVFGDMDKDTSAFTRGTRRLIALIGMCNFFVISVLCTLWPGVELITFTPPENKESIKLIWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209232_10000074	F084835	N/A	MKVSLPNLKNTLQSNVCEIIFEKRRPKPGDSTQRRMLCTLDDSLLNSVNGRLTLNYKPPAGPPKYNPASKNLLPVWDIMMQGWRMVSMDNCAIVNTIPEDEFFEYFNENIYPMSADEKRDYMGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209232_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences