NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1045193

Scaffold Ga0209128_1045193


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1045193 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1654
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017223Metagenome242Y
F033597Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209128_10451932F017223N/AMISLPEDFVILKFFELGFYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVAGNTDEEIIKELKEYIPDVKDITERDEKTKSDFKVETLPKDSINLSDKFQLDYYSNNNIVTAVRYLITKRRLDTAVNRPDNLYVSLVDRVHKNRLVIPFINENKEIEFYQTRTVLNKDGRVKPKYLGKVQAEKTLFNIDRVSSDHDKVYIFEGPLNAFFTKNSIAVAGITERGRSFTQRQEQQVNNTLKWYDKVWILDSQWVDQASLVKSEALLKQQEKVFIWPEKFGKRFKDFNDIAIACKIDEIKWDFIEKNTFEGLEGIVRLSEIKKYRNQTYLN
Ga0209128_10451933F033597N/ALEGWVGEIEVFLEYLNGSTLDSIQTVLASAEADTIFDRMKASEQRKIARVATELAALNESFKGYLAQTGNAQFKYV

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