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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025131 Open in IMG/M |
| Scaffold ID | Ga0209128_1012831 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4026 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013357 | Metagenome | 272 | Y |
| F019113 | Metagenome | 231 | Y |
| F028360 | Metagenome | 192 | Y |
| F042854 | Metagenome | 157 | Y |
| F062279 | Metagenome | 131 | Y |
| F064629 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209128_10128312 | F019113 | N/A | MSKRFEVGDLVRDNLNEGAGNYGLGVIVKIDVPGLLGEKWGRSDPPSDHDIPGKRYAVYFNKFERTITFHGDYLEKV |
| Ga0209128_10128313 | F042854 | GGAG | LKKFDKGLERYTRNRMRELRGDTPASWPEDPYVEAYTSRRIRELRLEHEMAQREIDLDNVALGGYTVVTLEAYDGKS |
| Ga0209128_10128314 | F013357 | GGAGG | MARARYIPGALVEARNSKYGKGFGIIVAGPWSDTKAASQYRDLANEQAWFKVHWFEKPGNVDSYYMRRGNGQIDMSKNQIKLVRKK |
| Ga0209128_10128315 | F064629 | GAGG | VTRLYEACAGNLEDFPERKGLRNFTWTNEAINDWEEIWHDLWRLGYKWEWQNSDRYARRYGEVFNLYAVHNDAVRLDMAIPLPGIVTFYEIRESLLINPGDDQRLDHAIGAVDRWLKKHYTQREPLFTEDKLCMRE |
| Ga0209128_10128316 | F062279 | GAGG | MYERMKAILHQCINVVLAVILVGAMGAYVVINSIIMTRVINDLQLDAYVTYDTGFGVVMLILLLGWGPVWLSRSLERRR |
| Ga0209128_10128319 | F028360 | N/A | MKDYKPHITMLKVEIKNEDESVLTVDISDDFVEWFKVTHNLKRWAPKQFKNWLIKVLEGDTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |