Scaffold Ga0209128_1011709

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1011709
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4294
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_101170912	F009562	AGGAG	MLAIPLIRTDDESNLTTIERTTLACEQVITALMMQGTLDDPTVTAQERDAFTTLSVATIIPAEA
Ga0209128_101170913	F014672	GAG	MSRFKPGDLVRIKDGTHQDGMPDHRVGMIVEVGETSKSYTKAYTVVFLGTDVHLKFHEMFLEHFTSS
Ga0209128_10117096	F057769	AGGAG	MTIEIGSIVTNRGFIQGRNNSNHGLVISMLADGKIARVFWASTQKSGFCSVSDLKVVA
Ga0209128_10117099	F008590	GGAGG	MQVGDLVTYHFQLSRWRKGESVSVGIVVETGKYTANRDVKVLWNDGTEPETEASQHLSLVDNLLTT