Scaffold Ga0209128_1008366

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1008366
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5412
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → unclassified Balneolaceae → Balneolaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F032243	Metagenome	180	Y
F040924	Metagenome	161	Y
F070308	Metagenome	123	Y
F084111	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_10083662	F084111	GAG	MRHDWEPNDQQNWEMNCEAERAAKVRPLRDYNGDILNPGDLVWLTNRVPKELALVLGESHRENVLVRYIKGGLDFVIYEMDCEKVK
Ga0209128_10083663	F070308	GGAGG	MKVGNLVKRRDPSWDTQNQLGLVISMETVEYSPKVAKVKWIGGNYPSFMYRPDDLIVVSEVK
Ga0209128_10083666	F032243	GGAGG	MSDNFEMYGAEEGWEHPDVGDLVEIASKSSLKTEVGVVVEPNEFIKNDHLWAQVLLNNGKMKILPKRELKVIQRGGRNDEG
Ga0209128_10083667	F030729	AGGAG	MKVTKKKIETILQQDERMKWISLWYDRAVKQWVFVGGDSAMWSTSGTGVFRLDMLSVEEWVDYAYELAGRKRHVR
Ga0209128_10083669	F040924	GGAGG	MKTKMVYLTVAVEIDAEADEREVMENCDYFFDSSAIKSAAIEEIFTEEEMKQNNDSDLYGLGSSNFA