Scaffold Ga0209128_1004545

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1004545
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8147
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065100	Metagenome	128	Y
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100454510	F098231	GGAGG	MEVGDLVKQREVGVAILSEFIRSGLNMGMIGVIKTVHDKTNFSYDGRNRGDITVVWSNGREEVLPEIYLEVITNEQRP
Ga0209128_100454511	F088745	GGAGG	MNKDLDTKIWLALDKTEHQIRRSAYLSTGEVFQKKIYEALDLIKEVKEEVEKRLDTKP
Ga0209128_10045455	F065100	GGA	METAWNSSIMDAIQARILKLSKEMLEKLKNKVLGDSQTLKFEVGEIVRWPGWEHTDENVTRNYKYGVLLSIYTGKLDKRDIKIAEILPFGHSNPVKISLILVKKSDLED