Scaffold Ga0209128_1003186

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1003186
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10210
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026439	Metagenome	198	Y
F037423	Metagenome / Metatranscriptome	168	Y
F046417	Metagenome	151	Y
F057769	Metagenome / Metatranscriptome	136	Y
F083258	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100318612	F046417	GGAG	MKDFFEQPPTHDLKVGDLVTCTCHGGVAIVVELYDTGEEIKMNMAKIWWISPAYTKQERSWMHTIGRLNKYGEHWPE
Ga0209128_100318613	F083258	AGGAG	METIHTIATPDLTAKLNKAEIDIIHFIDSWLPTLTDWSVDELSHKCRLFTTDAHAAVDMLILHGLLDNAPKCDVTGRRVSVPPIAARWMRENTETINSIKLMNDTDLYDDTEIAES
Ga0209128_100318619	F026439	AGGAG	MASQLDTVLTFDQATEQFTDCILPMIQESEQRLGHVDIPARSEAWSNFVDGLHYDEQISDWQVSNWEHPDCCND
Ga0209128_10031862	F037423	AGGA	MSKYLQDPEYLFSILTALVKKNNGKITITEEELKAVSKGDLIGMYYEPKTGDLILKEVGKEDMLQATSMIREKKEEAYEN
Ga0209128_100318620	F057769	AGGAG	MTIEIGSIVTNVGFIQGRSNSNHGLVISMLADGKIARVFWASTQTSGFCSVVDLKVVA