Scaffold Ga0209128_1003031

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1003031
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10519
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F011680	Metagenome	288	Y
F072515	Metagenome	121	Y
F096198	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100303113	F011680	AGGAGG	MENQKSSHMPKKTKTTRKKEIIDPCPICSKELHLNHEFTQRIGLLDEMDEVTGWLCPHCSSEFNTDNQLTKFMGECGMRGEA
Ga0209128_100303114	F072515	N/A	AYKKAYPDARNSTYIKARTDKLLKTETVRKMIDKQIEEILNEEGVTPSYLIERYKTIADMAESDPSKLRALDSLSKIAGLFDLGEKKSEQVTIWAGFSPEQLEEVKKHGKPEIIAHAEKDEND
Ga0209128_10030312	F007012	AGGA	MAIIFYCHRCGQRGEFKHKKDMRCDCGHYIKKRNNAKDHVNMRTTWSGTTKVEFSTTTMEEDIAQRNNR
Ga0209128_10030314	F096198	AGGAG	MPFKSKKQKVQGGKLNGPSHDAGGIPIEAEGGEFIIKRDSVNSSTLDMLEYVNKHGDLPMSNAKNRRK