Scaffold Ga0209128_1001622

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1001622
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15283
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (82.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F071130	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100162211	F016410	N/A	MRKFSSRKEQLEWADKLLRKLSEKNTGGVTPIIKQMITKNYIGRLKDE
Ga0209128_100162222	F071130	AGGAG	MSIGIKHTKTEQRKVVNRVFGLVRNGHSITSARKTIAKEIGVSPNTLWVWQDKFEMTTPKVIKTTDLVKNHGTTRKSTALSTKSGTTVIKGLEIMKGKLGTVFTSLVDQDGRFSNQDATAISGVANVILGSCKQVLLERKAMGKVNKTETLI
Ga0209128_10016227	F016673	N/A	MESESNLEDIAIKSYLELYLRSLNDSKPQKFINIIKGRMLELIKRKQLRNK