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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025131 Open in IMG/M |
| Scaffold ID | Ga0209128_1001558 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15580 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (67.65%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005524 | Metagenome | 398 | Y |
| F013357 | Metagenome | 272 | Y |
| F017121 | Metagenome | 242 | Y |
| F021532 | Metagenome | 218 | Y |
| F034892 | Metagenome | 173 | Y |
| F100958 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209128_100155812 | F100958 | GGAG | MVFHGDYEVEFEIYEKHESDWRSKLLGHMPGISAQDAKNRWTEAHNVQGERCERLVALFPVEEWK |
| Ga0209128_100155813 | F034892 | N/A | MEIKVGDLVRIRGNDWLGKPLGIVTEIRPLIHEQSGAQYTAVTAIVAGKSFTFPDEAFELINSIERTKE |
| Ga0209128_100155818 | F013357 | GGAG | MARAKYIPGALVEARNSKYGKGFGIIIAGPWSDTKAASQYRDLMEEQAWFRVHWFEKPGNVDSYYMRRDKGQIDMSKNQIKLVRKK |
| Ga0209128_100155834 | F005524 | GAG | MDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPHKDSWERRGDLSVVSAGIYDFTIAD |
| Ga0209128_10015585 | F021532 | GGAG | MNKKEVLVLKDKWNPGAHEVPAARSLEMVEVSDAEFRETPFPLSLDTQRKLLELIYRRKSGIITRQELINVLYDSEIAEPGKIIRCVI |
| Ga0209128_10015586 | F017121 | AGGAG | MFSMIQKLLNRARSFDALFERVEKIEAALVRLEALADENESLWQYLDEQKEMDNLFVGTEEEFEAEFTDMMLRNMKPRGDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |