Scaffold Ga0209128

Basic Information
Taxon OID	3300025131 Open in IMG/M
Scaffold ID	Ga0209128_1001191 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025131 Open in IMG/M

Scaffold ID

Ga0209128_1001191 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18073
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (33.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18073

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (33.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006343	Metagenome / Metatranscriptome	375	N
F007652	Metagenome / Metatranscriptome	347	Y
F010828	Metagenome	298	N
F031053	Metagenome	183	Y
F058891	Metagenome / Metatranscriptome	134	N
F071094	Metagenome / Metatranscriptome	122	Y
F072852	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100119112	F071094	GGA	MIIFLLTVSVCLLLLVVGMLIYIGYKLRQFEDVQEVIFDAAVNAEERNREIELNQEAILNAYSRQN
Ga0209128_100119126	F010828	N/A	VRDKAVIDLLGDEELRELAQKICSVPDDLIQEVALVLMELPEEKWQQINEGGYLRYYVVRTMLNMATSPRSSFSKLYNLYNYERSDYDREDYDEEKEADLQLLETLMEELHWYDKKILEMWLEEGSYRKVAAKVDIPFKSIGNSVKRALTTLKQNYYGIHLERLVRGNVGIHLDRRYRTGHTDKEVG
Ga0209128_100119130	F058891	GGA	MDKKQVLLFIKERQEALTKMKASQFAGRITREEQKLYQEAWSYIDPKAKVCFSCGRSPQIMSVALLNYYEANKPKRRKKK
Ga0209128_100119131	F031053	GAG	MKQNEQHENYGLYITQNTFTMKFYCFSRDDADDYWVGNPCKKASGKTSQEALSNYKNGVYCDK
Ga0209128_100119135	F006343	N/A	MKIELPNSWEGVTIEQFQALQKILAEKGDEYATNMAIISIMSGVPVDEIETYALKTYAKCMSTLSFLSEQLVGEVQKAVEFGGFRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLHEIMAVFLVPKEKTWWGWKSQKYNSKKHKEIAEAMLQAPMTIVQPLSAFFLTSYLKSAKHILESSVRKAEKIKKQAEKKLRRLKQNTAG
Ga0209128_10011914	F072852	N/A	MTDSQKLLGGRGCKVLGIAAHTSLTGYAFIAQEDTTVTVFTVGTTDSLAAYGLSGTTLKAGAYIVVPSGEAITAITLTGGSVIIYNQ
Ga0209128_10011916	F007652	N/A	MNEIKYPSVRTYYICFDNERIEVKSYGWVEPNQVFDTIWIFDEFTDEAEWLEELAEYGIVPEVDEQGNVVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209128_1001191

Overview

Ecosystem & Geography

Associated Families

Sequences