Scaffold Ga0209128_1001169

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1001169
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18285
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017148	Metagenome / Metatranscriptome	242	Y
F021787	Metagenome	217	N
F025853	Metagenome / Metatranscriptome	200	Y
F084710	Metagenome / Metatranscriptome	112	N
F089035	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100116910	F017148	N/A	LLTYVLTCAIILPVMRDKMKNQYIDWLNARDARRVVAPVEGHEGYRVVSAMTVRDLQQDDFASPVEEDCGWFGYEGLCED
Ga0209128_100116911	F084710	N/A	MNKNNEIVNPIDNGQVITSEVLVSCCGCNEELRITREEADEWTDTDWFMCHECE
Ga0209128_100116912	F089035	N/A	MTSKMIRKPKPDALKRLEAAQAQARKQKRMIKEALETIRLNKPYKRSEDAPTLKEWNDSWIG
Ga0209128_100116926	F021787	N/A	LTTPVFCVMLFPVMRDMISCEEVFEADPQARAEFDAVCDEWLNEAIDAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV
Ga0209128_100116929	F025853	N/A	MKKFLVNYIPAVHEGQENKEDKSYSYRVEMDEQFANRSEKDESAGMAAKDSESGLWKRFRWDRIQSAVAI