Scaffold Ga0209128_1001152

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1001152
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18426
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F018619	Metagenome	234	Y
F035959	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_100115212	F035959	AGG	VNVTFGATGDVYEKGKIYDVPAELLEKYPDYFKVKEAKKPTNKQQETQENK
Ga0209128_100115215	F008778	GAGG	MSRSGALSQIDTLLSTISDPAFVAVYRGEPLAISGSPVLAYWLTGRIAAFETLGDIGSRVSVMVRAYFRMQDSPDVRESIEEAVWDAMYQIDAKLRSDANLGGNVTDSNVGPATIGYVNMGGGVFRTVSVPFEMELMGEVTITP
Ga0209128_100115225	F018619	GGA	MVTAALLNANIKANLDVLSAHAHSGAAGNGSATLSGVSIAALVVPTFADQSGNPSTAGRLQRNGNNLVYYTGSAVVGLYADGVAGTATLRTLGTGAQQAAAGNHTH