Scaffold Ga0209128_1000479

Overview

Basic Information

• Taxon OID: 3300025131
• Scaffold ID: Ga0209128_1000479
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29922
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (68.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209128_10004795	F019253	AGG	MIDVEAIKKFNNYMTQATGRVPLLTVQSIKDNRFTVLRNFLSASFEDVEDNAWSVSQNLGKFIDALNTMEPEDIKKITNTVRKYQVKGENFGIRGERTYGYDYSRIDQSLIRRKRGN
Ga0209128_10004798	F015360	N/A	MDYLWAPKDEKLVSSLLDSLGIEKVGTSERYPTGVKYDALVAICDVISANDKTASMVASRTHELQSARKVTGKAPSVDSVVSALASGKMSEADLKEAMKKAGLLK
Ga0209128_10004799	F006773	N/A	MNRLQTKTSLPWKGASEKEVDFFVEVGTTPYGKYGMYKEMIPVGTGSRGSHQAIADSVRLSNPEVFELYELRQVVSRG