Scaffold Ga0208919_1066602

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1066602
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1205
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F043075	Metagenome	157	Y
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10666022	F103402	N/A	MANTYNWSRLEPLVKDEDNLDNVVVKLVCGMTASDGNGNSAYIDTMHTLAAPDPSGFIPFADLTQEWAIEIADAVAESDGFRDTLDRQIEAAKLRPSPKPFSWQQPAPEPSE
Ga0208919_10666023	F043075	GGTGG	MTDISEWLKMFGVNGGVLAAVSLTDIELMLKIILLILTCIWSCLKIIKLTKE
Ga0208919_10666024	F010273	N/A	MKEKLKSRKLWMAIGGLLTVMATEWLNLSPELSEQVIGAVIIIVPAYIGGQGIVDAMKEYAAKK