Scaffold Ga0208919_1059167

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1059167
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006717	Metagenome	366	Y
F022974	Metagenome / Metatranscriptome	212	Y
F056894	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10591671	F006717	N/A	MIELWIALVLTWNPVERVVDKEFNTEKECWDYYETIIAPDTTLGEGKWGKQNLTHQDRRPDKNFHFKTNWTYPIRTYKGLGSTSSGKDQVWLSCEPKYAKIYNE
Ga0208919_10591672	F056894	GAG	MNLGMRNGKMVGTTELNERMNGATVLARLTEYGMSAFTYANETQAMRARDRWRHSVMNETLSFDVIRGSRVWFVRVSERG
Ga0208919_10591673	F022974	AGG	MDRETYYVAKLMKEGEFLSSEIFESLESARLWAMKETKLLVSDSYLKRCAADDIVVEIDEHFFGYECSVGELIRHNEREL