Scaffold Ga0208919_1018902

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1018902
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2625
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020188	Metagenome / Metatranscriptome	225	Y
F025298	Metagenome	202	N
F104034	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10189023	F104034	AGGAG	MQKREFKDAMKEMSEHVSTRIRYYSDEIVANYKTQDGKVLSGTDLNGARAVLYVILNKLLEDFEPKDNTYEKIENDLCDFFDISYESREYEEEELS
Ga0208919_10189026	F025298	AGTAG	MLKMKKKLIVSAVRKVKDKVIVSYTDGTMKEFSVNEWLYSYGEGRRLWEQHEKEFKNPENFDG
Ga0208919_10189028	F020188	AGGAG	MTDIKKYKSVAISIDTYKRAKPIAEKNYMSMASFLRYLIDKEEDRPTLKNGEDKHVRQ