Scaffold Ga0208919_1018219

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1018219
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2681
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031253	Metagenome	183	Y
F073440	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10182194	F073440	GGA	MPKIPTFTAKGRPTAEVGSVTSNIRIDPRATMAASLLPAAQAIDNYTIKKRDNEEKLIAKKAVLELKAESDKIIQSQKDNISEDESINNWKTTFTPLVNQKLSTVKNRRVKKLIESGIDLENSESIYHLKQNSFKAYEKESVKLYNDDVNADVAKFKSETNPVLKQKYKDQLYLKAELFNEEHMLGSNDLKKRKEAIDSNLLLTDADSFIGTPDAVEKIKKIDKDINGAKFLSDETFNNSIYNSYVQKIESIAVKGDPNADYEEAERLLNELENFERYNGSKTISGKREAQFATLKQKILSESITHDTFVRKIEQGNKFFEYQTEQKKLLESNFYNSMIPTINKAIDKERAVEASLEYDERIDLYVQSNPDATYPEQQQYARQLRIDLYDKYQDVKTEQITAFNLEENKFNVIREADKIIEAKNKYITDPKAKNILITMSRLNGYVDEKGNPEVIRFYNDYIKILKSRQEG
Ga0208919_10182195	F031253	AGAAGG	MADVQLSEEAIEFEKQFEESTKKVEPVNSGLITNPDEKDFNFWNKAGSLTLSAAQGVVNAVEEQ