Scaffold Ga0208919_1016298

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1016298
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2869
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033836	Metagenome	176	Y
F066845	Metagenome	126	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10162981	F066845	AGGA	MMNNRQIAIAKHNASKKRFADIFTGCLSAGTLKQTQKKIKTFKL
Ga0208919_10162986	F033836	N/A	LGWCFVHRIVWILDYMGNTMSISEYELFGVSHHANETNTYRAVSKGISGMAEKNETTTTTQEKRFASMAKETEVKAATLCVLALLAGLCCALMLGCSTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFSEWTDSWCEAHIGETAFCSASK
Ga0208919_10162988	F079193	AGGA	MMKCEAVKTIFKSEDYGLEDHTLTIDKISELDPQGNVMLVKYIAYVIDPLDNAMVFNYSPYAKLGELLDSAKMWIQCGCPSDGDAQGFPRKWDTESLHEWANLGNH