Scaffold Ga0208919_1008598

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1008598
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F034719	Metagenome	174	Y
F059371	Metagenome	134	Y
F101914	Metagenome	102	Y
F104033	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100859810	F104033	GGAG	MIVFNDSYKSEGFEVAIEKVNELLVDLGLKLEYNFIEDFVSDDGEYAYTLTIERHEEFKDDKQLHLL
Ga0208919_100859811	F101914	AGGAG	MTNSYTCSRCGCVHWDELEPISCIMCDNGTFYDSPDKFYQKELETQTNYVKETDDAKD
Ga0208919_100859812	F022285	AGGAG	MPKIKKPQTLVKWGHEDVTMLELFKELKKLICDPVRNLHDMDGDMYMSDYHKLSEAEWKILSSLRLLEGDKE
Ga0208919_10085985	F059371	AGGAG	MIFLLIFPILFTEVNADALNKFQEEMDAGAEWHHVGEQDIDPNAKSIDVEGKIYYKLKWKDKK
Ga0208919_10085989	F034719	AGGA	MRRQSDKVWDYDAIDKQRNEDWNGIHKLVTDHAVEKRVTAEEIAKRNSIFYNHREINKP