Scaffold Ga0208919_1007252

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1007252
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4770
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F015401	Metagenome / Metatranscriptome	255	Y
F030887	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10072523	F015401	GGA	MKTTEDNILNVMHNNHRILIDKITEYDYNGDMAVVKKMCTVIRYDNYSDGEEIVTPMIFNVSPYTSLVDMHTMARVWIDCGCPSDGDANGIPRKWTKESLHEWVAS
Ga0208919_10072528	F007343	GGA	MRVSDLQPAAYPQSPSVENPNSDSHRLLTNDYNKASFIEANGDVEVVWNEQYSYWAVPAFAEARKAYCDAKQRYCEQYGSN
Ga0208919_10072529	F030887	AGGA	MINATHNVRVIKHINGNYDTYANFTTVQNALHHMRRMNFASDSWYIIDANDNRLKLDTNDKLVVFNSLIGY