Scaffold Ga0208919_1003681

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1003681
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7406
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003761	Metagenome / Metatranscriptome	470	Y
F029903	Metagenome	187	N
F048239	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100368112	F048239	GGA	MEDIQLKDQDIAELFNRMPEAKREAIIIAQERMIKELKDQNLELSKKNLNGVKKVKAGV
Ga0208919_10036815	F003761	AGGAG	VAALVELATTDIWGHEPCWHLSEINRPARDSKDVRRYQTITVIRNDRKVKLERDIGNARLFGEEFQLICGVSDGKGGGEALYNVDEAIRMAQDMNLKPPPKTEIKPKDWTKIFWDNIEERNKWIKGQSIFGPNYKKERT
Ga0208919_10036817	F029903	GGA	MPKNNFAAIPNSLVTHAVTDAATSLTVPDTANYAEGYVRTNSVVETRDGTAPTTTKGTQWAAGDIITLRSRDEVTAFKVIRENASNAATIDFQFYNKVPGMN