Scaffold Ga0208919_1001968

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1001968
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11170
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041491	Metagenome	160	Y
F044200	Metagenome	155	Y
F059454	Metagenome	134	Y
F076604	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100196818	F076604	N/A	MCEVSPCCGCNYENSWITDCCSVEIYSESSKCPSCKENTECSGYICNECGNWFEYPEESREREARLYENYLEEKADARRKYGE
Ga0208919_100196823	F044200	N/A	MSTLPFNLNTTTSGKAQGEKVEYITPGAYECKITGVSTSEKLEDYKGSPFIDYAVTSNGKVGRCRFWAVKETDKPSTKEWKTKQIKDFLINAGVRDFSDDSKAMNDALGNSLMVTFISEEYIGKNRDTSEPVIRTSVKYRWSAKSGGKCTYNANMNQELSEEEMSEFSMQHSEWSKANEAVSASSDDEDMPF
Ga0208919_10019684	F041491	N/A	MTDLMLQSISFNVSKTINIGNFEAVKINYGESVAVDPTRDVEEQRKEMIDNCYKVVGRETKVWQGLKAVQHVDSQKNTTVLKAKSYNK
Ga0208919_10019685	F059454	GAG	VKSYLLKKLIKGFKINPKHSGLDLVALPYKYTNEKILVKHSNKKMIIDQDTPLLGKQTFPDKFGRDKTYTLYYYPWQPSKNQIKLEL