Scaffold Ga0208919_1001687

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1001687
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12356
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036927	Metagenome	169	Y
F050428	Metagenome	145	N
F101325	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100168716	F050428	AGGAG	MRQYKNDTRLVISDGLLNTLDVIFPNKLPSFLVNEAEIAQLIGQQQVVTWIKDKQEELRNQSIEHEGQVTIKGD
Ga0208919_10016876	F101325	GAGG	MQNSSSVDMANVNVKNVSQGMMRVVDSLDGFKKAEKYAILSAVFNCLYINKMRKERSISDVMEMIGKMRRDCKFKQIPEFGGAEKYIIGEL
Ga0208919_10016878	F036927	GAGG	MPDYDFCRNMNQKMIANRIRDLKSDDLSSLVENVTVMINCGQFPHEAFHEVRAVYKLLLNLKLSAKEDEAFN