Scaffold Ga0208919_1000823

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000823
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19337
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F031530	Metagenome	182	Y
F033836	Metagenome	176	Y
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100082318	F007343	N/A	MTNNNIPTKGNNTMRVSELQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNNQYKYWAVPAFAESRAAYGEAKQRFCDQHGSE
Ga0208919_100082319	F031530	GGAG	MIMDFVVYKSEADDTGRLVELVRNRHCEVYEVIVDGIPVFNCEDYPQALHEYNMECV
Ga0208919_100082320	F033836	GAG	LVWCSRHRVVWSLYVNGGIMTISEYEFFGAGKYANAKDTRDTNSAGIPATRKPEEETSTKEERFIDMVNETEVKSAAFCALALLAGLCCALLLGCSTSAKVEGGAEIIEMKPLKMQELTYPAYDYDKICADCGFTEWTDSWCEAHMGSTAFCSASK
Ga0208919_100082329	F095345	AGGA	MSDLRIIKERRFYDQHGNKKFALLEEGQTVKIESHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGLEE