Scaffold Ga0208919_1000522

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000522
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25725
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (82.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003706	Metagenome	473	N
F008452	Metagenome / Metatranscriptome	333	Y
F010426	Metagenome / Metatranscriptome	304	Y
F019729	Metagenome / Metatranscriptome	228	Y
F062828	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100052213	F003706	AGG	VSEVSDVELGKLIQQISTLEVMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGQ
Ga0208919_100052216	F019729	GGA	MSHLKENNMSWGMHLWYAITLATRLLLLSLTAVAHGLLPFIFTSKVSDEVHKLNEELS
Ga0208919_100052218	F010426	AGGAGG	MEKWKELSPGKKRFYAALGIIIIAAIVGAVSGWWSSPPAA
Ga0208919_100052219	F008452	GGAGG	MLSDNINRVANVVGMDSSRPIGEKEETKKLVLIEWVDIISDDGWVTAEDCHLPTFYSVGWLEYQDDKVLKICNTLDFDDALEEHKKKEKPIGYAVTCFPMGCVTNVTEIKSSLGSPFV
Ga0208919_10005225	F062828	GGA	MGKLVEETKSRGVVMGECKVVLVAQEDIEYVWDEVAPLMDSALKHSEGELLTEDLVEHLDNDDLRLWVAMKNDKVIAAMITEIITYPRKKILRVITLAGKDMNLWYDFLPSVEGYALSHQCSALEAWTRKGMTRKLKDWKHSYDIITKDLKPRMQ