Scaffold Ga0208919_1000476

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000476
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26912
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (88.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F010167	Metagenome	307	Y
F025051	Metagenome / Metatranscriptome	203	Y
F036736	Metagenome / Metatranscriptome	169	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100047615	F048916	N/A	MGILSELAAPVANFGLGLYNADTYYSKECAWYEQVKFSEDTKQWLLQNNPPEIVSKDLAYVARNNDIYKEVCDAKEPAEEE
Ga0208919_100047616	F002078	AGGAG	MDIAAMFEGQGWFAIVGQIVLVFTAITGSLPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAAPAVEKEIDEAKAKVRDRAGMPDVLDGL
Ga0208919_100047619	F036736	AGGA	MTDKFNEMLIGALAIVGGFITKRVFNNHDSVSDRITALEKTVVTKDDLIHIERNVEMIVSHLINKKGDSS
Ga0208919_100047638	F025051	AGAAG	MNKYINTNDHKNLSRTAHAILLPLMLLSNKNNEINKRYFTKTVSWISDYRTWNKYWKELEDKGILTQLDKSTWMVSPHECYTDAASHTALITKWNEVYNATS
Ga0208919_10004765	F010167	GGAG	MIFTHVSLIQEGEAALFYRFDRKLNGYMIAGVLVTDNMEAKLDFVKVWKYFVSEVVQADDIYASIPIALSNSMFANYTTYYDTIEGRKIYKVDNYLKKQYSNYEKHKERAGSNT