Scaffold Ga0208919_1000409

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1000409
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29695
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016063	Metagenome / Metatranscriptome	250	Y
F016083	Metagenome / Metatranscriptome	250	Y
F025855	Metagenome	200	Y
F052642	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100040910	F025855	AGGA	MNKCIHCKENNKENWFYCRSCGKKASESKFTTNMWMMSKMGKRTDVEVSTQSISENTNKMRRNLGYGS
Ga0208919_100040920	F016083	AGG	MSLYKYTGQEAANLLIGQFGFDVIGEHDTTVVNPSTGSWIAIQALGKDSSGTTEFLKLKVTSNIGDGIDSFFSLIPGEILYGNFSGIVNHTDSTAVCIAYRG
Ga0208919_100040923	F052642	AGGA	MSKVNDFFLQFGADKYMHFMGGAAGYAITESWIVLGIQAFGKELYDYIDHKAWSNKDIVATVLGGVFSFVAMLIWNLIPFNIY
Ga0208919_10004099	F016063	GGA	MKAASLNQNSSSYQTGEKAFQKIDNSAAVARTLTAAESGTLFAVDMSTVDNNVALTLPTASDAIAGCSYDFCFTVNCDDDADFSITTGANGTDIYGYVVAGAANSTVDDVDGLSKITVDGSVSQAIEGLRMTLICDGVNWHLSGYIPVAIGTVVLVESASA